PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 64aa    MW: 6831.74 Da    PI: 8.9729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39687genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309.1e-103257227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lC+ f     Ck+G++C+FaHg+
  PEQU_39687 32 KTRLCNKFNTPEGCKFGEKCHFAHGE 57
                8***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-152661IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-92961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7983058IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-73257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MSSLGNPSFT AASRNPVGTL PISDGPPTPA AKTRLCNKFN TPEGCKFGEK CHFAHGEREL  60
GRPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913902.16e-24PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7F8R02e-21C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM0TF802e-23M0TF80_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06400_0015e-23(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-09C3H family protein